Tutorials

LPhy BEAST

• Please read the installation instructions before moving on.

Beginner

• Time-stamped data tutorial

• Skyline plots

Advanced

• Structured coalescent

• Discrete phylogeography

Post-analysis

• Simple tree ESS

Model validation

• LPhy simulations to validate models

• 5-Step Pipeline to summarise coverage

How to write a tutorial

• Tips

Setup

• Jekyll and Step by Step Tutorial

• Bundler’s Purpose and Rationale

Syntax

• kramdown

• Liquid

• MathJax