LPhy Extensions
Available extensions
Extension | Beast package version | LPhy extension version | Homepage | Examples |
---|---|---|---|---|
Phylonco | v1.0.0 | v0.0.3 | https://github.com/bioDS/beast-phylonco | phylonco-lphy-examples.zip |
Manual installation
Installing the extension
LPhy extensions can be installed manually by downloading the extension jar and placing it inside the lib
subdirectory of your LPhy installation location.
For example, to install the Phylonco extension for LPhy:
-
Go to the releases page of the extension, e.g., Phylonco releases
-
Download the jar with the prefix
-lphy-(version number).jar
, for example phylonco-lphy-0.0.3.jar -
Place the jar inside the
lib
subdirectory of your LPhy installation
Your directory structure should look like this:
Loading examples
Examples can be found in the releases page of the extension. To load the examples into LPhy Studio:
-
Go to the releases page of the extension, e.g., Phylonco releases
-
Download the file with the suffix
*-lphy-examples.zip
, e.g., phylonco-lphy-examples.zip -
Unzip the
*-lphy-examples.zip
file inside theexamples
subdirectory of your LPhy installation. Your directory structure should look like this:
- Restart LPhy Studio, and these examples will be available through the Menu “File” -> “Example scripts” -> “extensionName”. For the Phylonco extension, this will be available through “File” -> “Example scripts” -> “phylonco”. Loading in the example script
gt16CoalErrModel.lphy
will display:
Installing by extension manager
Extensions can also be installed using the “LPhy Extension Manager” from the Menu in LPhy Studio.
This functionality will be added in future releases.