setInternalNodesID(TimeTree tree, Object[] internalNodesID)

Assign IDs to internal nodes of a given tree. Use this to trigger the inclusion of internal node sequences in the simulated alignment generated by PhyloCTMC.

Parameters

  • TimeTree tree - the tree to set internal nodes id.
  • Object[] internalNodesID - (optional) the vector of internal nodes id.

Return type

TimeTree