jukesCantor(Number meanRate)

The Jukes-Cantor Q matrix construction function. Takes a mean rate and produces a Jukes-Cantor Q matrix.

Parameters

  • Number meanRate - (optional) the rate of the Jukes-Cantor process. Default value is 1.0.

Return type

Double[][]

Examples

  • jcCoalescent.lphy

Reference

Jukes, T. H., & Cantor, C. R. (1969). Evolution of protein molecules. Mammalian protein metabolism, 3, 21-132.https://doi.org/10.1016/B978-1-4832-3211-9.50009-7