binaryCovarion(Number alpha, Number s, Number[] vfreq, Number[] hfreq, Number meanRate)

The rate matrix of the Covarion model for Binary data. It is equivalent to the BEAST mode.

Parameters

  • Number alpha - the rate of evolution in slow mode.
  • Number s - the rate of flipping between slow and fast modes
  • Number[] vfreq - the frequencies of the visible states
  • Number[] hfreq - the frequencies of the hidden rates
  • Number meanRate - (optional) the mean rate of the process. default = 1.0

Return type

Double[][]

Examples

  • cpacific.lphy